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A High Efficient Biological Language Model for Predicting Protein-Protein Interactions 期刊论文
CELLS, 2019, 卷号: 8, 期号: 2, 页码: 1-12
Authors:  Wang, YB (Wang, Yanbin)[ 1,2 ];  You, ZH (You, Zhu-Hong)[ 1 ];  Yang, S (Yang, Shan)[ 1,2 ];  Li, X (Li, Xiao)[ 1 ];  Jiang, TH (Jiang, Tong-Hai)[ 1 ];  Zhou, X (Zhou, Xi)[ 1 ]
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protein-protein interactions  bio-language processing  sentencepiece  convolution neural network  unigram language model  
Improved Prediction of Protein-Protein Interactions Using Descriptors Derived From PSSM via Gray Level Co-Occurrence Matrix 期刊论文
IEEE ACCESS, 2019, 卷号: 7, 期号: 4, 页码: 49456-49465
Authors:  Zhu, HJ (Zhu, Hui-Juan)[ 1 ];  You, ZH (You, Zhu-Hong)[ 2,3 ];  Shi, WL (Shi, Wei-Lei)[ 2 ];  Xu, SK (Xu, Shou-Kun)[ 4 ];  Jiang, TH (Jiang, Tong-Hai)[ 2,3 ];  Zhuang, LH (Zhuang, Li-Hua)[ 4 ]
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Protein-protein interactions  rotation forest  position-specific scoring matrix  gray level co-occurrence matrix  
Protein-Protein Interactions Prediction via Multimodal Deep Polynomial Network and Regularized Extreme Learning Machine 期刊论文
IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS, 2019, 卷号: 23, 期号: 3, 页码: 1290-1303
Authors:  Lei, HJ (Lei, Haijun)[ 1 ];  Wen, YT (Wen, Yuting)[ 1 ];  You, ZH (You, Zhuhong)[ 2 ];  Elazab, A (Elazab, Ahmed)[ 3 ];  Tan, EL (Tan, Ee-Leng)[ 4 ];  Zhao, YJ (Zhao, Yujia)[ 1 ];  Lei, BY (Lei, Baiying)[ 3 ]
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Protein-protein interactions  prediction  multimodal deep polynomial network  regularization extreme learning machine  
Accurate Prediction of ncRNA-Protein Interactions From the Integration of Sequence and Evolutionary Information 期刊论文
FRONTIERS IN GENETICS, 2018, 卷号: 9, 期号: 10, 页码: 1-9
Authors:  Zhan, ZH (Zhan, Zhao-Hui)[ 1 ];  You, ZH (You, Zhu-Hong)[ 2 ];  Li, LP (Li, Li-Ping)[ 2 ];  Zhou, Y (Zhou, Yong)[ 1 ];  Yi, HC (Yi, Hai-Cheng)[ 2 ]
Adobe PDF(1220Kb)  |  Favorite  |  View/Download:24/0  |  Submit date:2018/10/19
Ncrna-protein Interactions  Pssm  Lightgbm  Pseudo-zernike Moments  K-mers  
PCLPred: A Bioinformatics Method for Predicting Protein-Protein Interactions by Combining Relevance Vector Machine Model with Low-Rank Matrix Approximation 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2018, 卷号: 19, 期号: 4, 页码: 1-13
Authors:  Li, LP (Li, Li-Ping)[ 1 ];  Wang, YB (Wang, Yan-Bin)[ 2 ];  You, ZH (You, Zhu-Hong)[ 1 ];  Li, Y (Li, Yang)[ 1 ];  An, JY (An, Ji-Yong)[ 3 ]
Adobe PDF(2668Kb)  |  Favorite  |  View/Download:105/0  |  Submit date:2018/10/30
Protein-protein Interactions (Ppi)  Low Rank  Protein Sequence  Relevance Vector Machine (Rvm)  Evolutionary Information  
An Ensemble Classifier with Random Projection for Predicting Protein-Protein Interactions Using Sequence and Evolutionary Information 期刊论文
APPLIED SCIENCES-BASEL, 2018, 卷号: 8, 期号: 1, 页码: 1-15
Authors:  Song, XY (Song, Xiao-Yu);  Chen, ZH (Chen, Zhan-Heng);  Sun, XY (Sun, Xiang-Yang);  You, ZH (You, Zhu-Hong);  Li, LP (Li, Li-Ping);  Zhao, Y (Zhao, Yang)
Adobe PDF(3673Kb)  |  Favorite  |  View/Download:50/0  |  Submit date:2018/03/05
Protein-protein Interactions  Position-specific Scoring Matrix  Random Projection Ensemble Classifier  Support Vector Machine  
Prediction of protein-protein interactions by label propagation with protein evolutionary and chemical information derived from heterogeneous network 期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2017, 卷号: 430, 期号: 10, 页码: 9-20
Authors:  Wen, YT (Wen, Yu-Ting);  Lei, HJ (Lei, Hai-Jun);  You, ZH (You, Zhu-Hong);  Lei, BY (Lei, Bai-Ying);  Chen, X (Chen, Xing);  Li, LP (Li, Li-Ping)
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Protein-protein Interactions  Prediction  Similarity Network Fusion  Label Propagation Algorithm  
Detection of Interactions between Proteins by Using Legendre Moments Descriptor to Extract Discriminatory Information Embedded in PSSM 期刊论文
MOLECULES, 2017, 卷号: 22, 期号: 8, 页码: 1-13
Authors:  Wang, YB (Wang, Yan-Bin);  You, ZH (You, Zhu-Hong);  Li, LP (Li, Li-Ping);  Huang, YA (Huang, Yu-An);  Yi, HC (Yi, Hai-Cheng)
Adobe PDF(977Kb)  |  Favorite  |  View/Download:30/0  |  Submit date:2017/09/26
Protein-protein Interactions  Legendre Moments  Position Specific Scoring Matrix  Probabilistic Classification Vector Machine  
Accurate prediction of protein-protein interactions by integrating potential evolutionary information embedded in PSSM profile and discriminative vector machine classifier 期刊论文
ONCOTARGET, 2017, 卷号: 8, 期号: 14, 页码: 23638-23649
Authors:  Li, ZW (Li, Zheng-Wei);  You, ZH (You, Zhu-Hong);  Chen, X (Chen, Xing);  Li, LP (Li, Li-Ping);  Huang, DS (Huang, De-Shuang);  Yan, GY (Yan, Gui-Ying);  Nie, R (Nie, Ru);  Huang, YA (Huang, Yu-An)
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Disease  Position-specific Scoring Matrix  Weber Local Descriptor  Cancer  Protein-protein Interactions  
Highly Efficient Framework for Predicting Interactions Between Proteins 期刊论文
IEEE TRANSACTIONS ON CYBERNETICS, 2017, 卷号: 47, 期号: 3, 页码: 731-743
Authors:  You, ZH (You, Zhu-Hong);  Zhou, MC (Zhou, MengChu);  Luo, X (Luo, Xin);  Li, S (Li, Shuai)
Adobe PDF(3031Kb)  |  Favorite  |  View/Download:69/0  |  Submit date:2017/03/23
Big Data  Feature Extraction  Kernel Extreme Learning Machine (K-elm)  Low-rank Approximation (Lra)  Protein-protein Interactions (Ppis)  Support Vector Machine (Svm)