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An Improved Deep Forest Model for Predicting Self-Interacting Proteins From Protein Sequence Using Wavelet Transformation 期刊论文
FRONTIERS IN GENETICS, 2019, 卷号: 10, 期号: 3, 页码: 1-10
Authors:  Chen, ZH (Chen, Zhan-Heng)[ 1,2 ];  Li, LP (Li, Li-Ping)[ 1 ];  He, Z (He, Zhou)[ 3 ];  Zhou, JR (Zhou, Ji-Ren)[ 1 ];  Li, YM (Li, Yangming)[ 4 ];  Wong, L (Wong, Leon)[ 1,2 ]
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self-interacting proteins  disease  position-specific scoring matrix  deep learning  wavelet transform  
BGFE: A Deep Learning Model for ncRNA-Protein Interaction Predictions Based on Improved Sequence Information 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2019, 卷号: 20, 期号: 4, 页码: 1-14
Authors:  Zhan, ZH (Zhan, Zhao-Hui)[ 1 ];  Jia, LN (Jia, Li-Na)[ 2 ];  Zhou, Y (Zhou, Yong)[ 1 ];  Li, LP (Li, Li-Ping)[ 3 ];  Yi, HC (Yi, Hai-Cheng)[ 3 ]
Adobe PDF(1535Kb)  |  Favorite  |  View/Download:13/0  |  Submit date:2019/05/16
ncRNA-protein interaction  bi-gram  position specific scoring matrix  k-mers  deep learning  
Improved Prediction of Protein-Protein Interactions Using Descriptors Derived From PSSM via Gray Level Co-Occurrence Matrix 期刊论文
IEEE ACCESS, 2019, 卷号: 7, 期号: 4, 页码: 49456-49465
Authors:  Zhu, HJ (Zhu, Hui-Juan)[ 1 ];  You, ZH (You, Zhu-Hong)[ 2,3 ];  Shi, WL (Shi, Wei-Lei)[ 2 ];  Xu, SK (Xu, Shou-Kun)[ 4 ];  Jiang, TH (Jiang, Tong-Hai)[ 2,3 ];  Zhuang, LH (Zhuang, Li-Hua)[ 4 ]
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Protein-protein interactions  rotation forest  position-specific scoring matrix  gray level co-occurrence matrix  
Prediction of Self-Interacting Proteins from Protein Sequence Information Based on Random Projection Model and Fast Fourier Transform 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2019, 卷号: 20, 期号: 4, 页码: 1-15
Authors:  Chen, ZH (Chen, Zhan-Heng)[ 1,2 ];  You, ZH (You, Zhu-Hong)[ 1,2 ];  Li, LP (Li, Li-Ping)[ 1 ];  Wang, YB (Wang, Yan-Bin)[ 1 ];  Wong, L (Wong, Leon)[ 1,2 ];  Yi, HC (Yi, Hai-Cheng)[ 1,2 ]
Adobe PDF(969Kb)  |  Favorite  |  View/Download:23/0  |  Submit date:2019/05/16
self-interacting proteins  position-specific scoring matrix  fast Fourier transform  random projection  
An Ensemble Classifier with Random Projection for Predicting Protein-Protein Interactions Using Sequence and Evolutionary Information 期刊论文
APPLIED SCIENCES-BASEL, 2018, 卷号: 8, 期号: 1, 页码: 1-15
Authors:  Song, XY (Song, Xiao-Yu);  Chen, ZH (Chen, Zhan-Heng);  Sun, XY (Sun, Xiang-Yang);  You, ZH (You, Zhu-Hong);  Li, LP (Li, Li-Ping);  Zhao, Y (Zhao, Yang)
Adobe PDF(3673Kb)  |  Favorite  |  View/Download:47/0  |  Submit date:2018/03/05
Protein-protein Interactions  Position-specific Scoring Matrix  Random Projection Ensemble Classifier  Support Vector Machine  
A Computational-Based Method for Predicting Drug-Target Interactions by Using Stacked Autoencoder Deep Neural Network 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2018, 卷号: 25, 期号: 3, 页码: 361-373
Authors:  Wang, L (Wang, Lei);  You, ZH (You, Zhu-Hong);  Chen, X (Chen, Xing);  Xia, SX (Xia, Shi-Xiong);  Liu, F (Liu, Feng);  Yan, X (Yan, Xin);  Zhou, Y (Zhou, Yong);  Song, KJ (Song, Ke-Jian)
Adobe PDF(479Kb)  |  Favorite  |  View/Download:46/0  |  Submit date:2018/05/14
Deep Learning  Drug-target Interactions  Position-specific Scoring Matrix  Stacked Autoencoder  
RFDT: A Rotation Forest-based Predictor for Predicting Drug-Target Interactions Using Drug Structure and Protein Sequence Information 期刊论文
CURRENT PROTEIN & PEPTIDE SCIENCE, 2018, 卷号: 19, 期号: 5, 页码: 445-454
Authors:  Wang, L (Wang, Lei);  You, ZH (You, Zhu-Hong);  Chen, X (Chen, Xing);  Yan, X (Yan, Xin);  Liu, G (Liu, Gang);  Zhang, W (Zhang, Wei)
Favorite  |  View/Download:28/0  |  Submit date:2018/05/15
Target Interactions  Position-specific Scoring Matrix  Auto Covariance  Rotation Forest  Support Vector Machine  Drug Substructure Fingerprint  
An ensemble approach for large-scale identification of protein-protein interactions using the alignments of multiple sequences 期刊论文
ONCOTARGET, 2017, 卷号: 8, 期号: 3, 页码: 5149-5159
Authors:  Wang, L (Wang, Lei);  You, ZH (You, Zhu-Hong);  Chen, X (Chen, Xing);  Li, JQ (Li, Jian-Qiang);  Yan, X (Yan, Xin);  Zhang, W (Zhang, Wei);  Huang, YA (Huang, Yu-An)
Adobe PDF(2107Kb)  |  Favorite  |  View/Download:70/0  |  Submit date:2017/03/17
Disease  Position-specific Scoring Matrix  Multiple Sequences Alignments  Cancer  
Detection of Interactions between Proteins by Using Legendre Moments Descriptor to Extract Discriminatory Information Embedded in PSSM 期刊论文
MOLECULES, 2017, 卷号: 22, 期号: 8, 页码: 1-13
Authors:  Wang, YB (Wang, Yan-Bin);  You, ZH (You, Zhu-Hong);  Li, LP (Li, Li-Ping);  Huang, YA (Huang, Yu-An);  Yi, HC (Yi, Hai-Cheng)
Adobe PDF(977Kb)  |  Favorite  |  View/Download:30/0  |  Submit date:2017/09/26
Protein-protein Interactions  Legendre Moments  Position Specific Scoring Matrix  Probabilistic Classification Vector Machine  
Accurate prediction of protein-protein interactions by integrating potential evolutionary information embedded in PSSM profile and discriminative vector machine classifier 期刊论文
ONCOTARGET, 2017, 卷号: 8, 期号: 14, 页码: 23638-23649
Authors:  Li, ZW (Li, Zheng-Wei);  You, ZH (You, Zhu-Hong);  Chen, X (Chen, Xing);  Li, LP (Li, Li-Ping);  Huang, DS (Huang, De-Shuang);  Yan, GY (Yan, Gui-Ying);  Nie, R (Nie, Ru);  Huang, YA (Huang, Yu-An)
Adobe PDF(3973Kb)  |  Favorite  |  View/Download:63/0  |  Submit date:2017/05/17
Disease  Position-specific Scoring Matrix  Weber Local Descriptor  Cancer  Protein-protein Interactions