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基于深度学习的蛋白质相互作用预测研究 学位论文
硕士, 北京: 中国科学院大学, 2018
Authors:  王延斌
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蛋白质相互作用  深度学习  长短时记忆模型  位置特异性打分矩阵  
基于非负矩阵分解的重叠社区发现研究及其应用 学位论文
硕士, 北京: 中国科学院大学, 2018
Authors:  赵清华
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重叠社区发现  非负矩阵分解  复杂网络  社交网络  
Accurate Prediction of ncRNA-Protein Interactions From the Integration of Sequence and Evolutionary Information 期刊论文
FRONTIERS IN GENETICS, 2018, 卷号: 9, 期号: 10, 页码: 1-9
Authors:  Zhan, ZH (Zhan, Zhao-Hui)[ 1 ];  You, ZH (You, Zhu-Hong)[ 2 ];  Li, LP (Li, Li-Ping)[ 2 ];  Zhou, Y (Zhou, Yong)[ 1 ];  Yi, HC (Yi, Hai-Cheng)[ 2 ]
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Ncrna-protein Interactions  Pssm  Lightgbm  Pseudo-zernike Moments  K-mers  
PCLPred: A Bioinformatics Method for Predicting Protein-Protein Interactions by Combining Relevance Vector Machine Model with Low-Rank Matrix Approximation 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2018, 卷号: 19, 期号: 4, 页码: 1-13
Authors:  Li, LP (Li, Li-Ping)[ 1 ];  Wang, YB (Wang, Yan-Bin)[ 2 ];  You, ZH (You, Zhu-Hong)[ 1 ];  Li, Y (Li, Yang)[ 1 ];  An, JY (An, Ji-Yong)[ 3 ]
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Protein-protein Interactions (Ppi)  Low Rank  Protein Sequence  Relevance Vector Machine (Rvm)  Evolutionary Information  
Using Two-dimensional Principal Component Analysis and Rotation Forest for Prediction of Protein-Protein Interactions 期刊论文
SCIENTIFIC REPORTS, 2018, 卷号: 8, 期号: 12874, 页码: 1-9
Authors:  Wang, L (Wang, Lei)[ 1,2 ];  You, ZH (You, Zhu-Hong)[ 2 ];  Yan, X (Yan, Xin)[ 4 ];  Xia, SX (Xia, Shi-Xiong)[ 3 ];  Liu, F (Liu, Feng)[ 5 ];  Li, LP (Li, Li-Ping)[ 2 ];  Zhang, W (Zhang, Wei)[ 1 ];  Zhou, Y (Zhou, Yong)[ 3 ]
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DRMDA: deep representations-based miRNA-disease association prediction 期刊论文
JOURNAL OF CELLULAR AND MOLECULAR MEDICINE, 2018, 卷号: 22, 期号: 1, 页码: 472-485
Authors:  Chen, X (Chen, Xing);  Gong, Y (Gong, Yao);  Zhang, DH (Zhang, De-Hong);  You, ZH (You, Zhu-Hong);  Li, ZW (Li, Zheng-Wei)
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Mirna  Disease  Mirna-disease Association  Deep Representation  Auto-encoder  
An Ensemble Classifier with Random Projection for Predicting Protein-Protein Interactions Using Sequence and Evolutionary Information 期刊论文
APPLIED SCIENCES-BASEL, 2018, 卷号: 8, 期号: 1, 页码: 1-15
Authors:  Song, XY (Song, Xiao-Yu);  Chen, ZH (Chen, Zhan-Heng);  Sun, XY (Sun, Xiang-Yang);  You, ZH (You, Zhu-Hong);  Li, LP (Li, Li-Ping);  Zhao, Y (Zhao, Yang)
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Protein-protein Interactions  Position-specific Scoring Matrix  Random Projection Ensemble Classifier  Support Vector Machine  
A Computational-Based Method for Predicting Drug-Target Interactions by Using Stacked Autoencoder Deep Neural Network 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2018, 卷号: 25, 期号: 3, 页码: 361-373
Authors:  Wang, L (Wang, Lei);  You, ZH (You, Zhu-Hong);  Chen, X (Chen, Xing);  Xia, SX (Xia, Shi-Xiong);  Liu, F (Liu, Feng);  Yan, X (Yan, Xin);  Zhou, Y (Zhou, Yong);  Song, KJ (Song, Ke-Jian)
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Deep Learning  Drug-target Interactions  Position-specific Scoring Matrix  Stacked Autoencoder  
Restricted Boltzmann Machine-Based Approaches for Link Prediction in Dynamic Networks 期刊论文
IEEE ACCESS, 2018, 卷号: 6, 期号: 6, 页码: 29940-29951
Authors:  Li, TS (Li, Taisong)[ 1,2 ];  Wang, B (Wang, Bing)[ 1 ];  Jiang, YS (Jiang, Yasong)[ 1 ];  Zhang, Y (Zhang, Yan)[ 1 ];  Yan, YH (Yan, Yonghong)[ 1,2,3 ]
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Link Prediction  Social Network Analysis  Deep Learning  
Predicting protein-protein interactions from protein sequences by a stacked sparse autoencoder deep neural network 期刊论文
MOLECULAR BIOSYSTEMS, 2017, 卷号: 13, 期号: 7, 页码: 1336-1344
Authors:  Wang, YB (Wang, Yan-Bin);  You, ZH (You, Zhu-Hong);  Li, X (Li, Xiao);  Jiang, TH (Jiang, Tong-Hai);  Chen, X (Chen, Xing);  Zhou, X (Zhou, Xi);  Wang, L (Wang, Lei)
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