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Sequence-based Prediction of Protein-Protein Interactions Using Gray Wolf Optimizer-Based Relevance Vector Machine 期刊论文
EVOLUTIONARY BIOINFORMATICS, 2019, 卷号: 15, 期号: 5, 页码: 1-10
Authors:  An, JY (An, Ji-Yong)[ 1,2 ];  You, ZH (You, Zhu-Hong)[ 3 ];  Zhou, Y (Zhou, Yong)[ 1,2 ];  Wang, DF (Wang, Da-Fu)[ 1,2 ]
Adobe PDF(462Kb)  |  Favorite  |  View/Download:33/0  |  Submit date:2019/06/28
RVM  gray wolf optimizer  BIG  PSSM  
Improving Prediction of Self-interacting Proteins Using Stacked Sparse Auto-Encoder with PSSM profiles 期刊论文
INTERNATIONAL JOURNAL OF BIOLOGICAL SCIENCES, 2018, 卷号: 14, 期号: 8, 页码: 983-991
Authors:  Wang, YB (Wang, Yan-Bin);  You, ZH (You, Zhu-Hong);  Li, LP (Li, Li-Ping);  Huang, DS (Huang, De-Shuang);  Zhou, FF (Zhou, Feng-Feng);  Yang, S (Yang, Shan)
Adobe PDF(945Kb)  |  Favorite  |  View/Download:50/0  |  Submit date:2018/07/16
Deep Learning  Zernike Moments  Probabilistic Classification Vector Machines  
PCLPred: A Bioinformatics Method for Predicting Protein-Protein Interactions by Combining Relevance Vector Machine Model with Low-Rank Matrix Approximation 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2018, 卷号: 19, 期号: 4, 页码: 1-13
Authors:  Li, LP (Li, Li-Ping)[ 1 ];  Wang, YB (Wang, Yan-Bin)[ 2 ];  You, ZH (You, Zhu-Hong)[ 1 ];  Li, Y (Li, Yang)[ 1 ];  An, JY (An, Ji-Yong)[ 3 ]
Adobe PDF(2668Kb)  |  Favorite  |  View/Download:103/0  |  Submit date:2018/10/30
Protein-protein Interactions (Ppi)  Low Rank  Protein Sequence  Relevance Vector Machine (Rvm)  Evolutionary Information  
Predicting protein-protein interactions from protein sequences by a stacked sparse autoencoder deep neural network 期刊论文
MOLECULAR BIOSYSTEMS, 2017, 卷号: 13, 期号: 7, 页码: 1336-1344
Authors:  Wang, YB (Wang, Yan-Bin);  You, ZH (You, Zhu-Hong);  Li, X (Li, Xiao);  Jiang, TH (Jiang, Tong-Hai);  Chen, X (Chen, Xing);  Zhou, X (Zhou, Xi);  Wang, L (Wang, Lei)
Adobe PDF(2109Kb)  |  Favorite  |  View/Download:60/0  |  Submit date:2017/08/02
Detection of Interactions between Proteins by Using Legendre Moments Descriptor to Extract Discriminatory Information Embedded in PSSM 期刊论文
MOLECULES, 2017, 卷号: 22, 期号: 8, 页码: 1-13
Authors:  Wang, YB (Wang, Yan-Bin);  You, ZH (You, Zhu-Hong);  Li, LP (Li, Li-Ping);  Huang, YA (Huang, Yu-An);  Yi, HC (Yi, Hai-Cheng)
Adobe PDF(977Kb)  |  Favorite  |  View/Download:30/0  |  Submit date:2017/09/26
Protein-protein Interactions  Legendre Moments  Position Specific Scoring Matrix  Probabilistic Classification Vector Machine  
Prediction of Drug-Target Interaction Networks from the Integration of Protein Sequences and Drug Chemical Structures 期刊论文
MOLECULES, 2017, 卷号: 22, 期号: 7, 页码: 1-13
Authors:  Meng, FR (Meng, Fan-Rong);  You, ZH (You, Zhu-Hong);  Chen, X (Chen, Xing);  Zhou, Y (Zhou, Yong);  An, JY (An, Ji-Yong)
Adobe PDF(797Kb)  |  Favorite  |  View/Download:38/0  |  Submit date:2017/12/14
Dti  Rvm  Bigp  Pca  
Accurate prediction of protein-protein interactions by integrating potential evolutionary information embedded in PSSM profile and discriminative vector machine classifier 期刊论文
ONCOTARGET, 2017, 卷号: 8, 期号: 14, 页码: 23638-23649
Authors:  Li, ZW (Li, Zheng-Wei);  You, ZH (You, Zhu-Hong);  Chen, X (Chen, Xing);  Li, LP (Li, Li-Ping);  Huang, DS (Huang, De-Shuang);  Yan, GY (Yan, Gui-Ying);  Nie, R (Nie, Ru);  Huang, YA (Huang, Yu-An)
Adobe PDF(3973Kb)  |  Favorite  |  View/Download:63/0  |  Submit date:2017/05/17
Disease  Position-specific Scoring Matrix  Weber Local Descriptor  Cancer  Protein-protein Interactions  
PCVMZM: Using the Probabilistic Classification Vector Machines Model Combined with a Zernike Moments Descriptor to Predict Protein-Protein Interactions from Protein Sequences 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2017, 卷号: 18, 期号: 5
Authors:  Wang, YB (Wang, Yanbin);  You, ZH (You, Zhuhong);  Li, X (Li, Xiao);  Chen, X (Chen, Xing);  Jiang, TH (Jiang, Tonghai);  Zhang, JT (Zhang, Jingting);  You, ZH
Adobe PDF(736Kb)  |  Favorite  |  View/Download:50/0  |  Submit date:2017/09/26
Proteins  Position-specific Scoring Matrix  Probabilistic Classification Vector Machines  
Identification of self-interacting proteins by exploring evolutionary information embedded in PSI-BLAST-constructed position specific scoring matrix 期刊论文
ONCOTARGET, 2016, 卷号: 7, 期号: 50, 页码: 82440-82449
Authors:  An, JY (An, Ji-Yong);  You, ZH (You, Zhu-Hong);  Chen, X (Chen, Xing);  Huang, DS (Huang, De-Shuang);  Li, ZW (Li, Zheng-Wei);  Liu, G (Liu, Gang);  Wang, Y (Wang, Yin)
Adobe PDF(1035Kb)  |  Favorite  |  View/Download:101/0  |  Submit date:2017/02/14
Disease  Position-specific Scoring Matrix  Protein Self-interaction  Cancer  
Highly Accurate Prediction of Protein-Protein Interactions via Incorporating Evolutionary Information and Physicochemical Characteristics 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2016, 卷号: 17, 期号: 9, 页码: 1-12
Authors:  Li, ZW (Li, Zheng-Wei);  You, ZH (You, Zhu-Hong);  Chen, X (Chen, Xing);  Gui, J (Gui, Jie);  Nie, R (Nie, Ru)
Adobe PDF(754Kb)  |  Favorite  |  View/Download:107/0  |  Submit date:2016/12/07
Evolutionary Information  Physicochemical Characteristics  Protein Sequence  Protein Interactions  Discriminative Vector Machine