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A High Efficient Biological Language Model for Predicting Protein-Protein Interactions 期刊论文
CELLS, 2019, 卷号: 8, 期号: 2, 页码: 1-12
Authors:  Wang, YB (Wang, Yanbin)[ 1,2 ];  You, ZH (You, Zhu-Hong)[ 1 ];  Yang, S (Yang, Shan)[ 1,2 ];  Li, X (Li, Xiao)[ 1 ];  Jiang, TH (Jiang, Tong-Hai)[ 1 ];  Zhou, X (Zhou, Xi)[ 1 ]
Adobe PDF(1624Kb)  |  Favorite  |  View/Download:21/0  |  Submit date:2019/05/16
protein-protein interactions  bio-language processing  sentencepiece  convolution neural network  unigram language model  
Improved Prediction of Protein-Protein Interactions Using Descriptors Derived From PSSM via Gray Level Co-Occurrence Matrix 期刊论文
IEEE ACCESS, 2019, 卷号: 7, 期号: 4, 页码: 49456-49465
Authors:  Zhu, HJ (Zhu, Hui-Juan)[ 1 ];  You, ZH (You, Zhu-Hong)[ 2,3 ];  Shi, WL (Shi, Wei-Lei)[ 2 ];  Xu, SK (Xu, Shou-Kun)[ 4 ];  Jiang, TH (Jiang, Tong-Hai)[ 2,3 ];  Zhuang, LH (Zhuang, Li-Hua)[ 4 ]
Adobe PDF(8880Kb)  |  Favorite  |  View/Download:42/0  |  Submit date:2019/05/16
Protein-protein interactions  rotation forest  position-specific scoring matrix  gray level co-occurrence matrix  
Prediction of Self-Interacting Proteins from Protein Sequence Information Based on Random Projection Model and Fast Fourier Transform 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2019, 卷号: 20, 期号: 4, 页码: 1-15
Authors:  Chen, ZH (Chen, Zhan-Heng)[ 1,2 ];  You, ZH (You, Zhu-Hong)[ 1,2 ];  Li, LP (Li, Li-Ping)[ 1 ];  Wang, YB (Wang, Yan-Bin)[ 1 ];  Wong, L (Wong, Leon)[ 1,2 ];  Yi, HC (Yi, Hai-Cheng)[ 1,2 ]
Adobe PDF(969Kb)  |  Favorite  |  View/Download:17/0  |  Submit date:2019/05/16
self-interacting proteins  position-specific scoring matrix  fast Fourier transform  random projection  
Sequence-based Prediction of Protein-Protein Interactions Using Gray Wolf Optimizer-Based Relevance Vector Machine 期刊论文
EVOLUTIONARY BIOINFORMATICS, 2019, 卷号: 15, 期号: 5, 页码: 1-10
Authors:  An, JY (An, Ji-Yong)[ 1,2 ];  You, ZH (You, Zhu-Hong)[ 3 ];  Zhou, Y (Zhou, Yong)[ 1,2 ];  Wang, DF (Wang, Da-Fu)[ 1,2 ]
Adobe PDF(462Kb)  |  Favorite  |  View/Download:29/0  |  Submit date:2019/06/28
RVM  gray wolf optimizer  BIG  PSSM  
Protein-Protein Interactions Prediction via Multimodal Deep Polynomial Network and Regularized Extreme Learning Machine 期刊论文
IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS, 2019, 卷号: 23, 期号: 3, 页码: 1290-1303
Authors:  Lei, HJ (Lei, Haijun)[ 1 ];  Wen, YT (Wen, Yuting)[ 1 ];  You, ZH (You, Zhuhong)[ 2 ];  Elazab, A (Elazab, Ahmed)[ 3 ];  Tan, EL (Tan, Ee-Leng)[ 4 ];  Zhao, YJ (Zhao, Yujia)[ 1 ];  Lei, BY (Lei, Baiying)[ 3 ]
Adobe PDF(4814Kb)  |  Favorite  |  View/Download:28/0  |  Submit date:2019/06/28
Protein-protein interactions  prediction  multimodal deep polynomial network  regularization extreme learning machine  
基于深度学习的蛋白质相互作用预测研究 学位论文
硕士, 北京: 中国科学院大学, 2018
Authors:  王延斌
Adobe PDF(2046Kb)  |  Favorite  |  View/Download:171/0  |  Submit date:2018/07/06
蛋白质相互作用  深度学习  长短时记忆模型  位置特异性打分矩阵  
BNPMDA: Bipartite Network Projection for MiRNA-Disease Association prediction 期刊论文
BIOINFORMATICS, 2018, 卷号: 34, 期号: 18, 页码: 3178-3186
Authors:  Chen, X (Chen, Xing)[ 1 ];  Xie, D (Xie, Di)[ 2 ];  Wang, L (Wang, Lei)[ 1 ];  Zhao, Q (Zhao, Qi)[ 2,3 ];  You, ZH (You, Zhu-Hong)[ 4 ];  Liu, HS (Liu, Hongsheng)[ 3,5 ]
Adobe PDF(375Kb)  |  Favorite  |  View/Download:56/0  |  Submit date:2018/10/19
Improving Prediction of Self-interacting Proteins Using Stacked Sparse Auto-Encoder with PSSM profiles 期刊论文
INTERNATIONAL JOURNAL OF BIOLOGICAL SCIENCES, 2018, 卷号: 14, 期号: 8, 页码: 983-991
Authors:  Wang, YB (Wang, Yan-Bin);  You, ZH (You, Zhu-Hong);  Li, LP (Li, Li-Ping);  Huang, DS (Huang, De-Shuang);  Zhou, FF (Zhou, Feng-Feng);  Yang, S (Yang, Shan)
Adobe PDF(945Kb)  |  Favorite  |  View/Download:44/0  |  Submit date:2018/07/16
Deep Learning  Zernike Moments  Probabilistic Classification Vector Machines  
An improved efficient rotation forest algorithm to predict the interactions among proteins 期刊论文
SOFT COMPUTING, 2018, 卷号: 22, 期号: 10, 页码: 3373-3381
Authors:  Wang, L (Wang, Lei);  You, ZH (You, Zhu-Hong);  Xia, SX (Xia, Shi-Xiong);  Chen, X (Chen, Xing);  Yan, X (Yan, Xin);  Zhou, Y (Zhou, Yong);  Liu, F (Liu, Feng)
Adobe PDF(764Kb)  |  Favorite  |  View/Download:21/0  |  Submit date:2018/06/20
Rotation Forest  Ensemble Learning  Bioinformatics  Support Vector Machine  
PCLPred: A Bioinformatics Method for Predicting Protein-Protein Interactions by Combining Relevance Vector Machine Model with Low-Rank Matrix Approximation 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2018, 卷号: 19, 期号: 4, 页码: 1-13
Authors:  Li, LP (Li, Li-Ping)[ 1 ];  Wang, YB (Wang, Yan-Bin)[ 2 ];  You, ZH (You, Zhu-Hong)[ 1 ];  Li, Y (Li, Yang)[ 1 ];  An, JY (An, Ji-Yong)[ 3 ]
Adobe PDF(2668Kb)  |  Favorite  |  View/Download:82/0  |  Submit date:2018/10/30
Protein-protein Interactions (Ppi)  Low Rank  Protein Sequence  Relevance Vector Machine (Rvm)  Evolutionary Information