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An Improved Deep Forest Model for Predicting Self-Interacting Proteins From Protein Sequence Using Wavelet Transformation 期刊论文
FRONTIERS IN GENETICS, 2019, 卷号: 10, 期号: 3, 页码: 1-10
Authors:  Chen, ZH (Chen, Zhan-Heng)[ 1,2 ];  Li, LP (Li, Li-Ping)[ 1 ];  He, Z (He, Zhou)[ 3 ];  Zhou, JR (Zhou, Ji-Ren)[ 1 ];  Li, YM (Li, Yangming)[ 4 ];  Wong, L (Wong, Leon)[ 1,2 ]
Adobe PDF(2039Kb)  |  Favorite  |  View/Download:26/0  |  Submit date:2019/03/19
self-interacting proteins  disease  position-specific scoring matrix  deep learning  wavelet transform  
BGFE: A Deep Learning Model for ncRNA-Protein Interaction Predictions Based on Improved Sequence Information 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2019, 卷号: 20, 期号: 4, 页码: 1-14
Authors:  Zhan, ZH (Zhan, Zhao-Hui)[ 1 ];  Jia, LN (Jia, Li-Na)[ 2 ];  Zhou, Y (Zhou, Yong)[ 1 ];  Li, LP (Li, Li-Ping)[ 3 ];  Yi, HC (Yi, Hai-Cheng)[ 3 ]
Adobe PDF(1535Kb)  |  Favorite  |  View/Download:13/0  |  Submit date:2019/05/16
ncRNA-protein interaction  bi-gram  position specific scoring matrix  k-mers  deep learning  
Improved Prediction of Protein-Protein Interactions Using Descriptors Derived From PSSM via Gray Level Co-Occurrence Matrix 期刊论文
IEEE ACCESS, 2019, 卷号: 7, 期号: 4, 页码: 49456-49465
Authors:  Zhu, HJ (Zhu, Hui-Juan)[ 1 ];  You, ZH (You, Zhu-Hong)[ 2,3 ];  Shi, WL (Shi, Wei-Lei)[ 2 ];  Xu, SK (Xu, Shou-Kun)[ 4 ];  Jiang, TH (Jiang, Tong-Hai)[ 2,3 ];  Zhuang, LH (Zhuang, Li-Hua)[ 4 ]
Adobe PDF(8880Kb)  |  Favorite  |  View/Download:45/0  |  Submit date:2019/05/16
Protein-protein interactions  rotation forest  position-specific scoring matrix  gray level co-occurrence matrix  
Prediction of Self-Interacting Proteins from Protein Sequence Information Based on Random Projection Model and Fast Fourier Transform 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2019, 卷号: 20, 期号: 4, 页码: 1-15
Authors:  Chen, ZH (Chen, Zhan-Heng)[ 1,2 ];  You, ZH (You, Zhu-Hong)[ 1,2 ];  Li, LP (Li, Li-Ping)[ 1 ];  Wang, YB (Wang, Yan-Bin)[ 1 ];  Wong, L (Wong, Leon)[ 1,2 ];  Yi, HC (Yi, Hai-Cheng)[ 1,2 ]
Adobe PDF(969Kb)  |  Favorite  |  View/Download:20/0  |  Submit date:2019/05/16
self-interacting proteins  position-specific scoring matrix  fast Fourier transform  random projection  
Sequence-based Prediction of Protein-Protein Interactions Using Gray Wolf Optimizer-Based Relevance Vector Machine 期刊论文
EVOLUTIONARY BIOINFORMATICS, 2019, 卷号: 15, 期号: 5, 页码: 1-10
Authors:  An, JY (An, Ji-Yong)[ 1,2 ];  You, ZH (You, Zhu-Hong)[ 3 ];  Zhou, Y (Zhou, Yong)[ 1,2 ];  Wang, DF (Wang, Da-Fu)[ 1,2 ]
Adobe PDF(462Kb)  |  Favorite  |  View/Download:33/0  |  Submit date:2019/06/28
RVM  gray wolf optimizer  BIG  PSSM  
Predicting Protein-Protein Interactions from Matrix-Based Protein Sequence Using Convolution Neural Network and Feature-Selective Rotation Forest 期刊论文
SCIENTIFIC REPORTS, 2019, 卷号: 9, 期号: 7, 页码: 1-12
Authors:  Wang, L (Wang, Lei)[ 1,2 ];  Wang, HF (Wang, Hai-Feng)[ 1 ];  Liu, SR (Liu, San-Rong)[ 1 ];  Yan, X (Yan, Xin)[ 3 ];  Song, KJ (Song, Ke-Jian)[ 4 ]
Adobe PDF(2255Kb)  |  Favorite  |  View/Download:11/0  |  Submit date:2019/08/14
基于深度学习的蛋白质相互作用预测研究 学位论文
硕士, 北京: 中国科学院大学, 2018
Authors:  王延斌
Adobe PDF(2046Kb)  |  Favorite  |  View/Download:176/0  |  Submit date:2018/07/06
蛋白质相互作用  深度学习  长短时记忆模型  位置特异性打分矩阵  
Accurate Prediction of ncRNA-Protein Interactions From the Integration of Sequence and Evolutionary Information 期刊论文
FRONTIERS IN GENETICS, 2018, 卷号: 9, 期号: 10, 页码: 1-9
Authors:  Zhan, ZH (Zhan, Zhao-Hui)[ 1 ];  You, ZH (You, Zhu-Hong)[ 2 ];  Li, LP (Li, Li-Ping)[ 2 ];  Zhou, Y (Zhou, Yong)[ 1 ];  Yi, HC (Yi, Hai-Cheng)[ 2 ]
Adobe PDF(1220Kb)  |  Favorite  |  View/Download:24/0  |  Submit date:2018/10/19
Ncrna-protein Interactions  Pssm  Lightgbm  Pseudo-zernike Moments  K-mers  
Improving Prediction of Self-interacting Proteins Using Stacked Sparse Auto-Encoder with PSSM profiles 期刊论文
INTERNATIONAL JOURNAL OF BIOLOGICAL SCIENCES, 2018, 卷号: 14, 期号: 8, 页码: 983-991
Authors:  Wang, YB (Wang, Yan-Bin);  You, ZH (You, Zhu-Hong);  Li, LP (Li, Li-Ping);  Huang, DS (Huang, De-Shuang);  Zhou, FF (Zhou, Feng-Feng);  Yang, S (Yang, Shan)
Adobe PDF(945Kb)  |  Favorite  |  View/Download:48/0  |  Submit date:2018/07/16
Deep Learning  Zernike Moments  Probabilistic Classification Vector Machines  
An improved efficient rotation forest algorithm to predict the interactions among proteins 期刊论文
SOFT COMPUTING, 2018, 卷号: 22, 期号: 10, 页码: 3373-3381
Authors:  Wang, L (Wang, Lei);  You, ZH (You, Zhu-Hong);  Xia, SX (Xia, Shi-Xiong);  Chen, X (Chen, Xing);  Yan, X (Yan, Xin);  Zhou, Y (Zhou, Yong);  Liu, F (Liu, Feng)
Adobe PDF(764Kb)  |  Favorite  |  View/Download:24/0  |  Submit date:2018/06/20
Rotation Forest  Ensemble Learning  Bioinformatics  Support Vector Machine