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An improved efficient rotation forest algorithm to predict the interactions among proteins 期刊论文
SOFT COMPUTING, 2018, 卷号: 22, 期号: 10, 页码: 3373-3381
Authors:  Wang, L (Wang, Lei);  You, ZH (You, Zhu-Hong);  Xia, SX (Xia, Shi-Xiong);  Chen, X (Chen, Xing);  Yan, X (Yan, Xin);  Zhou, Y (Zhou, Yong);  Liu, F (Liu, Feng)
Adobe PDF(764Kb)  |  Favorite  |  View/Download:24/0  |  Submit date:2018/06/20
Rotation Forest  Ensemble Learning  Bioinformatics  Support Vector Machine  
PCLPred: A Bioinformatics Method for Predicting Protein-Protein Interactions by Combining Relevance Vector Machine Model with Low-Rank Matrix Approximation 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2018, 卷号: 19, 期号: 4, 页码: 1-13
Authors:  Li, LP (Li, Li-Ping)[ 1 ];  Wang, YB (Wang, Yan-Bin)[ 2 ];  You, ZH (You, Zhu-Hong)[ 1 ];  Li, Y (Li, Yang)[ 1 ];  An, JY (An, Ji-Yong)[ 3 ]
Adobe PDF(2668Kb)  |  Favorite  |  View/Download:103/0  |  Submit date:2018/10/30
Protein-protein Interactions (Ppi)  Low Rank  Protein Sequence  Relevance Vector Machine (Rvm)  Evolutionary Information  
Using Two-dimensional Principal Component Analysis and Rotation Forest for Prediction of Protein-Protein Interactions 期刊论文
SCIENTIFIC REPORTS, 2018, 卷号: 8, 期号: 12874, 页码: 1-9
Authors:  Wang, L (Wang, Lei)[ 1,2 ];  You, ZH (You, Zhu-Hong)[ 2 ];  Yan, X (Yan, Xin)[ 4 ];  Xia, SX (Xia, Shi-Xiong)[ 3 ];  Liu, F (Liu, Feng)[ 5 ];  Li, LP (Li, Li-Ping)[ 2 ];  Zhang, W (Zhang, Wei)[ 1 ];  Zhou, Y (Zhou, Yong)[ 3 ]
Adobe PDF(1360Kb)  |  Favorite  |  View/Download:40/0  |  Submit date:2018/09/18
An Ensemble Classifier with Random Projection for Predicting Protein-Protein Interactions Using Sequence and Evolutionary Information 期刊论文
APPLIED SCIENCES-BASEL, 2018, 卷号: 8, 期号: 1, 页码: 1-15
Authors:  Song, XY (Song, Xiao-Yu);  Chen, ZH (Chen, Zhan-Heng);  Sun, XY (Sun, Xiang-Yang);  You, ZH (You, Zhu-Hong);  Li, LP (Li, Li-Ping);  Zhao, Y (Zhao, Yang)
Adobe PDF(3673Kb)  |  Favorite  |  View/Download:47/0  |  Submit date:2018/03/05
Protein-protein Interactions  Position-specific Scoring Matrix  Random Projection Ensemble Classifier  Support Vector Machine  
A Computational-Based Method for Predicting Drug-Target Interactions by Using Stacked Autoencoder Deep Neural Network 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2018, 卷号: 25, 期号: 3, 页码: 361-373
Authors:  Wang, L (Wang, Lei);  You, ZH (You, Zhu-Hong);  Chen, X (Chen, Xing);  Xia, SX (Xia, Shi-Xiong);  Liu, F (Liu, Feng);  Yan, X (Yan, Xin);  Zhou, Y (Zhou, Yong);  Song, KJ (Song, Ke-Jian)
Adobe PDF(479Kb)  |  Favorite  |  View/Download:46/0  |  Submit date:2018/05/14
Deep Learning  Drug-target Interactions  Position-specific Scoring Matrix  Stacked Autoencoder  
A Deep Learning Framework for Robust and Accurate Prediction of ncRNA-Protein Interactions Using Evolutionary Information 期刊论文
MOLECULAR THERAPY-NUCLEIC ACIDS, 2018, 卷号: 11, 期号: 6, 页码: 337-344
Authors:  Yi, HC (Yi, Hai-Cheng)[ 1,2,3 ];  You, ZH (You, Zhu-Hong)[ 1,2 ];  Huang, DS (Huang, De-Shuang)[ 4 ];  Li, X (Li, Xiao)[ 1,2 ];  Jiang, TH (Jiang, Tong-Hai)[ 1,2 ];  Li, LP (Li, Li-Ping)[ 1,2 ]
Adobe PDF(609Kb)  |  Favorite  |  View/Download:36/0  |  Submit date:2018/10/07
An ensemble approach for large-scale identification of protein-protein interactions using the alignments of multiple sequences 期刊论文
ONCOTARGET, 2017, 卷号: 8, 期号: 3, 页码: 5149-5159
Authors:  Wang, L (Wang, Lei);  You, ZH (You, Zhu-Hong);  Chen, X (Chen, Xing);  Li, JQ (Li, Jian-Qiang);  Yan, X (Yan, Xin);  Zhang, W (Zhang, Wei);  Huang, YA (Huang, Yu-An)
Adobe PDF(2107Kb)  |  Favorite  |  View/Download:70/0  |  Submit date:2017/03/17
Disease  Position-specific Scoring Matrix  Multiple Sequences Alignments  Cancer  
PSPEL: In Silico Prediction of Self-Interacting Proteins from Amino Acids Sequences Using Ensemble Learning 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2017, 卷号: 14, 期号: 5, 页码: 1165-1172
Authors:  Li, JQ (Li, Jian-Qiang);  You, ZH (You, Zhu-Hong);  Li, X (Li, Xiao);  Ming, Z (Ming, Zhong);  Chen, X (Chen, Xing)
Adobe PDF(324Kb)  |  Favorite  |  View/Download:48/0  |  Submit date:2018/01/09
Self-interacting Proteins  Ensemble Classifier  Low Rank  Protein Sequence  
Advancing the prediction accuracy of protein-protein interactions by utilizing evolutionary information from position-specific scoring matrix and ensemble classifier 期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2017, 卷号: 418, 期号: 4, 页码: 105-110
Authors:  Wang, L (Wang, Lei);  You, ZH (You, Zhu-Hong);  Xia, SX (Xia, Shi-Xiong);  Liu, F (Liu, Feng);  Chen, X (Chen, Xing);  Yan, X (Yan, Xin);  Zhou, Y (Zhou, Yong)
Adobe PDF(446Kb)  |  Favorite  |  View/Download:53/0  |  Submit date:2017/05/17
Position-specific Scoring Matrix  Multiple Sequences Alignments  Rotation Forest  Cancer  
PCVMZM: Using the Probabilistic Classification Vector Machines Model Combined with a Zernike Moments Descriptor to Predict Protein-Protein Interactions from Protein Sequences 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2017, 卷号: 18, 期号: 5
Authors:  Wang, YB (Wang, Yanbin);  You, ZH (You, Zhuhong);  Li, X (Li, Xiao);  Chen, X (Chen, Xing);  Jiang, TH (Jiang, Tonghai);  Zhang, JT (Zhang, Jingting);  You, ZH
Adobe PDF(736Kb)  |  Favorite  |  View/Download:50/0  |  Submit date:2017/09/26
Proteins  Position-specific Scoring Matrix  Probabilistic Classification Vector Machines